Efficient computer programs have made it possible to elucidate and
analyze large-scale genomic sequences. Fundamental tasks, such as
the assembly of numerous whole-genome shotgun fragments, the
alignment of complementary DNA sequences with a long genome, and
the design of gene-specific primers or oligomers, require efficient
algorithms and state-of-the-art implementation techniques. This
textbook emphasizes basic software implementation techniques for
processing large-scale genome sequences and provides executable
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